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Parallelizing MCMC with Random Partition Trees

Neural Information Processing Systems

The modern scale of data has brought new challenges to Bayesian inference. In particular, conventional MCMC algorithms are computationally very expensive for large data sets. A promising approach to solve this problem is embarrassingly parallel MCMC (EP-MCMC), which first partitions the data into multiple subsets and runs independent sampling algorithms on each subset. The subset posterior draws are then aggregated via some combining rules to obtain the final approximation. Existing EP-MCMC algorithms are limited by approximation accuracy and difficulty in resampling. In this article, we propose a new EP-MCMC algorithm PART that solves these problems. The new algorithm applies random partition trees to combine the subset posterior draws, which is distribution-free, easy to resample from and can adapt to multiple scales. We provide theoretical justification and extensive experiments illustrating empirical performance.


Parallelizing MCMC with Random Partition Trees

Neural Information Processing Systems

The modern scale of data has brought new challenges to Bayesian inference. In particular, conventional MCMC algorithms are computationally very expensive for large data sets. A promising approach to solve this problem is embarrassingly parallel MCMC (EP-MCMC), which first partitions the data into multiple subsets and runs independent sampling algorithms on each subset. The subset posterior draws are then aggregated via some combining rules to obtain the final approximation. Existing EP-MCMC algorithms are limited by approximation accuracy and difficulty in resampling.


Scalable $k$-NN graph construction

arXiv.org Machine Learning

The $k$-NN graph has played a central role in increasingly popular data-driven techniques for various learning and vision tasks; yet, finding an efficient and effective way to construct $k$-NN graphs remains a challenge, especially for large-scale high-dimensional data. In this paper, we propose a new approach to construct approximate $k$-NN graphs with emphasis in: efficiency and accuracy. We hierarchically and randomly divide the data points into subsets and build an exact neighborhood graph over each subset, achieving a base approximate neighborhood graph; we then repeat this process for several times to generate multiple neighborhood graphs, which are combined to yield a more accurate approximate neighborhood graph. Furthermore, we propose a neighborhood propagation scheme to further enhance the accuracy. We show both theoretical and empirical accuracy and efficiency of our approach to $k$-NN graph construction and demonstrate significant speed-up in dealing with large scale visual data.